3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAUUAAAUC*GCC*GUGAC*GG
Length
19 nucleotides
Bulged bases
6P5K|1|2|G|407
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6P5K_002 not in the Motif Atlas
Homologous match to J4_8C3A_021
Geometric discrepancy: 0.1798
The information below is about J4_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78231.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6P5K|1|2|C|98
6P5K|1|2|A|99
6P5K|1|2|U|100
6P5K|1|2|U|101
6P5K|1|2|A|102
6P5K|1|2|A|103
6P5K|1|2|A|104
6P5K|1|2|U|105
6P5K|1|2|C|106
*
6P5K|1|2|G|355
6P5K|1|2|C|356
6P5K|1|2|C|357
*
6P5K|1|2|G|405
6P5K|1|2|U|406
6P5K|1|2|G|407
6P5K|1|2|A|408
6P5K|1|2|C|409
*
6P5K|1|2|G|431
6P5K|1|2|G|432

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4
Chain J
eS8
Chain M
uS17
Chain Y
uS12

Coloring options:


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