J4_6P5K_006

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

6P5K|1|5|G|959, 6P5K|1|5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|C|712
6P5K|1|5|C|713
*
6P5K|1|5|G|955
6P5K|1|5|A|956
6P5K|1|5|G|957
6P5K|1|5|G|958
6P5K|1|5|G|959
6P5K|1|5|A|960
6P5K|1|5|G|961
*
6P5K|1|5|U|971
6P5K|1|5|G|972
6P5K|1|5|U|973
6P5K|1|5|C|974
6P5K|1|5|G|975
6P5K|1|5|C|976
6P5K|1|5|C|977
6P5K|1|5|G|978
*
6P5K|1|5|C|1278
6P5K|1|5|A|1279
6P5K|1|5|C|1280
6P5K|1|5|G|1281
6P5K|1|5|G|1282
6P5K|1|5|G|1283
6P5K|1|5|G|1284

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AE

eL6

Chain AF

uL30

Chain Ae

eL32