J4_6P5K_009
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GG*UGUGAA*UGGAAAG*UC
- Length
- 17 nucleotides
- Bulged bases
- 6P5K|1|5|A|2696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5K|1|5|G|2618
6P5K|1|5|G|2619
*
6P5K|1|5|U|2637
6P5K|1|5|G|2638
6P5K|1|5|U|2639
6P5K|1|5|G|2640
6P5K|1|5|A|2641
6P5K|1|5|A|2642
*
6P5K|1|5|U|2692
6P5K|1|5|G|2693
6P5K|1|5|G|2694
6P5K|1|5|A|2695
6P5K|1|5|A|2696
6P5K|1|5|A|2697
6P5K|1|5|G|2698
*
6P5K|1|5|U|2718
6P5K|1|5|C|2719
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AR
- eL19
- Chain AU
- eL22
- Chain Ag
- eL34
- Chain Ak
- eL38
Coloring options: