J4_6P5K_009

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6P5K|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|G|2618
6P5K|1|5|G|2619
*
6P5K|1|5|U|2637
6P5K|1|5|G|2638
6P5K|1|5|U|2639
6P5K|1|5|G|2640
6P5K|1|5|A|2641
6P5K|1|5|A|2642
*
6P5K|1|5|U|2692
6P5K|1|5|G|2693
6P5K|1|5|G|2694
6P5K|1|5|A|2695
6P5K|1|5|A|2696
6P5K|1|5|A|2697
6P5K|1|5|G|2698
*
6P5K|1|5|U|2718
6P5K|1|5|C|2719

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain AU

eL22

Chain Ag

eL34

Chain Ak

eL38