3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUAAG*UUG*CC*GGG
Length
13 nucleotides
Bulged bases
6P5K|1|5|A|4234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5K|1|5|C|4231
6P5K|1|5|U|4232
6P5K|1|5|A|4233
6P5K|1|5|A|4234
6P5K|1|5|G|4235
*
6P5K|1|5|U|4289
6P5K|1|5|U|4290
6P5K|1|5|G|4291
*
6P5K|1|5|C|4318
6P5K|1|5|C|4319
*
6P5K|1|5|G|4328
6P5K|1|5|G|4329
6P5K|1|5|G|4330

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AD
uL18
Chain AT
eL21
Chain Ao
eL42

Coloring options:

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