J4_6P5K_013
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 6P5K|1|5|U|4677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5K|1|5|G|4587
6P5K|1|5|U|4588
6P5K|1|5|A|4589
6P5K|1|5|A|4590
*
6P5K|1|5|U|4620
6P5K|1|5|C|4621
*
6P5K|1|5|G|4676
6P5K|1|5|U|4677
6P5K|1|5|G|4678
*
6P5K|1|5|C|4712
6P5K|1|5|G|4713
6P5K|1|5|C|4714
6P5K|1|5|C|4715
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AO
- uL13
- Chain AV
- uL14
Coloring options: