J4_6P5N_009
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6P5N_009 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0983
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6P5N|1|5|G|3634
6P5N|1|5|A|3635
6P5N|1|5|C|3636
6P5N|1|5|U|3637
6P5N|1|5|G|3638
*
6P5N|1|5|C|3650
6P5N|1|5|A|3651
6P5N|1|5|A|3652
6P5N|1|5|A|3653
6P5N|1|5|G|3654
*
6P5N|1|5|U|3690
6P5N|1|5|G|3691
6P5N|1|5|A|3692
6P5N|1|5|U|3693
6P5N|1|5|U|3694
*
6P5N|1|5|A|3821
6P5N|1|5|U|3822
6P5N|1|5|G|3823
6P5N|1|5|A|3824
6P5N|1|5|A|3825
6P5N|1|5|C|3826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- uL2
- Chain An
- eL41
- Chain Ap
- eL43
Coloring options: