J4_6PC5_001

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PC5|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC5_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1439

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|C|268
6PC5|1|I|C|269
*
6PC5|1|I|G|370
6PC5|1|I|A|371
6PC5|1|I|G|372
6PC5|1|I|U|373
6PC5|1|I|A|374
6PC5|1|I|G|375
*
6PC5|1|I|U|399
6PC5|1|I|G|400
6PC5|1|I|A|401
6PC5|1|I|A|402
6PC5|1|I|U|403
6PC5|1|I|A|404
6PC5|1|I|U|405
6PC5|1|I|G|406
*
6PC5|1|I|C|421
6PC5|1|I|A|422
6PC5|1|I|A|423
6PC5|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains