J4_6PC8_001

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PC8|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.15

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PC8|1|I|C|268
6PC8|1|I|C|269
*
6PC8|1|I|G|370
6PC8|1|I|A|371
6PC8|1|I|G|372
6PC8|1|I|U|373
6PC8|1|I|A|374
6PC8|1|I|G|375
*
6PC8|1|I|U|399
6PC8|1|I|G|400
6PC8|1|I|A|401
6PC8|1|I|A|402
6PC8|1|I|U|403
6PC8|1|I|A|404
6PC8|1|I|U|405
6PC8|1|I|G|406
*
6PC8|1|I|C|421
6PC8|1|I|A|422
6PC8|1|I|A|423
6PC8|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains