3D structure

PDB id
6PC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 40q
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
6PC8|1|I|G|1271, 6PC8|1|I|A|1272, 6PC8|1|I|U|1273, 6PC8|1|I|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6PC8_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1082
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6PC8|1|I|C|1270
6PC8|1|I|G|1271
6PC8|1|I|A|1272
6PC8|1|I|U|1273
6PC8|1|I|A|1274
6PC8|1|I|A|1275
6PC8|1|I|A|1276
*
6PC8|1|I|U|1294
6PC8|1|I|C|1295
*
6PC8|1|I|G|1645
6PC8|1|I|C|1646
6PC8|1|I|U|1647
6PC8|1|I|U|1648
*
6PC8|1|I|A|2009
6PC8|1|I|G|2010

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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