J4_6PC8_006

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6PC8|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC8_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0671

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6PC8|1|I|U|1313
6PC8|1|I|C|1314
*
6PC8|1|I|G|1338
6PC8|1|I|G|1339
6PC8|1|I|U|1340
6PC8|1|I|G|1341
6PC8|1|I|A|1342
6PC8|1|I|G|1343
*
6PC8|1|I|C|1404
6PC8|1|I|U|1405
*
6PC8|1|I|A|1597
6PC8|1|I|A|1598
6PC8|1|I|U|1599
6PC8|1|I|C|1600
6PC8|1|I|G|1601
6PC8|1|I|U|1602
6PC8|1|I|A|1603

Current chains

Chain I

23S ribosomal RNA

Nearby chains