J4_6PCH_001

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PCH|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCH_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1409

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|C|268
6PCH|1|I|C|269
*
6PCH|1|I|G|370
6PCH|1|I|A|371
6PCH|1|I|G|372
6PCH|1|I|U|373
6PCH|1|I|A|374
6PCH|1|I|G|375
*
6PCH|1|I|U|399
6PCH|1|I|G|400
6PCH|1|I|A|401
6PCH|1|I|A|402
6PCH|1|I|U|403
6PCH|1|I|A|404
6PCH|1|I|U|405
6PCH|1|I|G|406
*
6PCH|1|I|C|421
6PCH|1|I|A|422
6PCH|1|I|A|423
6PCH|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains