J4_6PCQ_001

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PCQ|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCQ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1552

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|C|268
6PCQ|1|I|C|269
*
6PCQ|1|I|G|370
6PCQ|1|I|A|371
6PCQ|1|I|G|372
6PCQ|1|I|U|373
6PCQ|1|I|A|374
6PCQ|1|I|G|375
*
6PCQ|1|I|U|399
6PCQ|1|I|G|400
6PCQ|1|I|A|401
6PCQ|1|I|A|402
6PCQ|1|I|U|403
6PCQ|1|I|A|404
6PCQ|1|I|U|405
6PCQ|1|I|G|406
*
6PCQ|1|I|C|421
6PCQ|1|I|A|422
6PCQ|1|I|A|423
6PCQ|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains