J4_6PCR_001

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PCR|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCR_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1414

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCR|1|I|C|268
6PCR|1|I|C|269
*
6PCR|1|I|G|370
6PCR|1|I|A|371
6PCR|1|I|G|372
6PCR|1|I|U|373
6PCR|1|I|A|374
6PCR|1|I|G|375
*
6PCR|1|I|U|399
6PCR|1|I|G|400
6PCR|1|I|A|401
6PCR|1|I|A|402
6PCR|1|I|U|403
6PCR|1|I|A|404
6PCR|1|I|U|405
6PCR|1|I|G|406
*
6PCR|1|I|C|421
6PCR|1|I|A|422
6PCR|1|I|A|423
6PCR|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains