J4_6PCR_009

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6PCR|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCR_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.129

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6PCR|1|I|C|1833
6PCR|1|I|U|1834
6PCR|1|I|2MG|1835
*
6PCR|1|I|C|1905
6PCR|1|I|G|1906
*
6PCR|1|I|C|1924
6PCR|1|I|C|1925
6PCR|1|I|U|1926
6PCR|1|I|A|1927
6PCR|1|I|A|1928
6PCR|1|I|G|1929
6PCR|1|I|G|1930
6PCR|1|I|U|1931
6PCR|1|I|A|1932
6PCR|1|I|G|1933
*
6PCR|1|I|C|1967
6PCR|1|I|G|1968
6PCR|1|I|A|1969
6PCR|1|I|A|1970
6PCR|1|I|U|1971
6PCR|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2