J4_6PCR_011

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCR_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.064

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6PCR|1|I|G|2643
6PCR|1|I|G|2644
6PCR|1|I|G|2645
6PCR|1|I|C|2646
*
6PCR|1|I|G|2674
6PCR|1|I|A|2675
6PCR|1|I|C|2676
*
6PCR|1|I|G|2731
6PCR|1|I|G|2732
6PCR|1|I|A|2733
6PCR|1|I|A|2734
6PCR|1|I|G|2735
*
6PCR|1|I|U|2769
6PCR|1|I|G|2770
6PCR|1|I|C|2771

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13