J4_6PCS_001

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PCS|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1517

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCS|1|I|C|268
6PCS|1|I|C|269
*
6PCS|1|I|G|370
6PCS|1|I|A|371
6PCS|1|I|G|372
6PCS|1|I|U|373
6PCS|1|I|A|374
6PCS|1|I|G|375
*
6PCS|1|I|U|399
6PCS|1|I|G|400
6PCS|1|I|A|401
6PCS|1|I|A|402
6PCS|1|I|U|403
6PCS|1|I|A|404
6PCS|1|I|U|405
6PCS|1|I|G|406
*
6PCS|1|I|C|421
6PCS|1|I|A|422
6PCS|1|I|A|423
6PCS|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains