J4_6PCS_004

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6PCS|1|I|G|1271, 6PCS|1|I|A|1272, 6PCS|1|I|U|1273, 6PCS|1|I|A|1275, 6PCS|1|I|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCS_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0915

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6PCS|1|I|C|1270
6PCS|1|I|G|1271
6PCS|1|I|A|1272
6PCS|1|I|U|1273
6PCS|1|I|A|1274
6PCS|1|I|A|1275
6PCS|1|I|A|1276
*
6PCS|1|I|U|1294
6PCS|1|I|C|1295
*
6PCS|1|I|G|1645
6PCS|1|I|C|1646
6PCS|1|I|U|1647
6PCS|1|I|U|1648
*
6PCS|1|I|A|2009
6PCS|1|I|G|2010

Current chains

Chain I

23S ribosomal RNA

Nearby chains