J4_6PCT_001

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PCT|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCT_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1601

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCT|1|I|C|268
6PCT|1|I|C|269
*
6PCT|1|I|G|370
6PCT|1|I|A|371
6PCT|1|I|G|372
6PCT|1|I|U|373
6PCT|1|I|A|374
6PCT|1|I|G|375
*
6PCT|1|I|U|399
6PCT|1|I|G|400
6PCT|1|I|A|401
6PCT|1|I|A|402
6PCT|1|I|U|403
6PCT|1|I|A|404
6PCT|1|I|U|405
6PCT|1|I|G|406
*
6PCT|1|I|C|421
6PCT|1|I|A|422
6PCT|1|I|A|423
6PCT|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains