J4_6PJ6_001

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6PJ6|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PJ6_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1223

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PJ6|1|I|C|268
6PJ6|1|I|C|269
*
6PJ6|1|I|G|370
6PJ6|1|I|A|371
6PJ6|1|I|G|372
6PJ6|1|I|U|373
6PJ6|1|I|A|374
6PJ6|1|I|G|375
*
6PJ6|1|I|U|399
6PJ6|1|I|G|400
6PJ6|1|I|A|401
6PJ6|1|I|A|402
6PJ6|1|I|U|403
6PJ6|1|I|A|404
6PJ6|1|I|U|405
6PJ6|1|I|G|406
*
6PJ6|1|I|C|421
6PJ6|1|I|A|422
6PJ6|1|I|A|423
6PJ6|1|I|G|424

Current chains

Chain I

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28