J4_6PPF_001

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

6PPF|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PPF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2048

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6PPF|1|A|C|271
6PPF|1|A|C|272
*
6PPF|1|A|G|417
6PPF|1|A|A|418
6PPF|1|A|G|419
6PPF|1|A|U|420
6PPF|1|A|A|421
6PPF|1|A|C|422
*
6PPF|1|A|G|446
6PPF|1|A|G|447
6PPF|1|A|A|448
6PPF|1|A|A|449
6PPF|1|A|U|450
6PPF|1|A|C|451
6PPF|1|A|C|452
6PPF|1|A|G|453
*
6PPF|1|A|C|468
6PPF|1|A|A|469
6PPF|1|A|A|470
6PPF|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains