J4_6PPF_011

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PPF_011 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.2165

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6PPF|1|A|G|2672
6PPF|1|A|A|2673
6PPF|1|A|G|2674
6PPF|1|A|C|2675
*
6PPF|1|A|G|2703
6PPF|1|A|A|2704
6PPF|1|A|C|2705
*
6PPF|1|A|G|2760
6PPF|1|A|G|2761
6PPF|1|A|A|2762
6PPF|1|A|C|2763
6PPF|1|A|G|2764
*
6PPF|1|A|C|2798
6PPF|1|A|C|2799
6PPF|1|A|C|2800

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14