J4_6Q8Y_003
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q8Y_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.094
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6Q8Y|1|BQ|U|112
6Q8Y|1|BQ|C|113
*
6Q8Y|1|BQ|G|267
6Q8Y|1|BQ|A|268
6Q8Y|1|BQ|G|269
6Q8Y|1|BQ|U|270
6Q8Y|1|BQ|C|271
6Q8Y|1|BQ|G|272
*
6Q8Y|1|BQ|C|293
6Q8Y|1|BQ|U|294
6Q8Y|1|BQ|A|295
6Q8Y|1|BQ|A|296
6Q8Y|1|BQ|G|297
6Q8Y|1|BQ|U|298
6Q8Y|1|BQ|G|299
*
6Q8Y|1|BQ|U|316
6Q8Y|1|BQ|A|317
6Q8Y|1|BQ|A|318
6Q8Y|1|BQ|A|319
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BP
- 60S ribosomal protein L35-A
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