J4_6Q8Y_007

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q8Y_007 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.0919

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|BQ|G|1674
6Q8Y|1|BQ|G|1675
*
6Q8Y|1|BQ|C|1693
6Q8Y|1|BQ|U|1694
*
6Q8Y|1|BQ|A|1752
6Q8Y|1|BQ|G|1753
*
6Q8Y|1|BQ|U|1772
6Q8Y|1|BQ|C|1773

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BL

60S ribosomal protein L22-A

Chain BN

60S ribosomal protein L34-A