J4_8C3A_005

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C3A_005 not in the Motif Atlas

Homologous match to J4_5TBW_005

Geometric discrepancy: 0.1032

The information below is about J4_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78628.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8C3A|1|1|G|1670
8C3A|1|1|G|1671
*
8C3A|1|1|C|1689
8C3A|1|1|U|1690
*
8C3A|1|1|A|1748
8C3A|1|1|G|1749
*
8C3A|1|1|U|1768
8C3A|1|1|C|1769

Current chains

Chain 1

25S

Nearby chains

Chain 5

60S ribosomal protein L22-B

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38