J4_6Q8Y_008
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q8Y_008 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0609
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|G|2130
6Q8Y|1|BQ|A|2131
6Q8Y|1|BQ|C|2132
6Q8Y|1|BQ|U|2133
6Q8Y|1|BQ|G|2134
*
6Q8Y|1|BQ|C|2146
6Q8Y|1|BQ|A|2147
6Q8Y|1|BQ|U|2148
6Q8Y|1|BQ|A|2149
6Q8Y|1|BQ|G|2150
*
6Q8Y|1|BQ|U|2186
6Q8Y|1|BQ|G|2187
6Q8Y|1|BQ|A|2188
6Q8Y|1|BQ|U|2189
6Q8Y|1|BQ|U|2190
*
6Q8Y|1|BQ|A|2317
6Q8Y|1|BQ|U|2318
6Q8Y|1|BQ|U|2319
6Q8Y|1|BQ|A|2320
6Q8Y|1|BQ|A|2321
6Q8Y|1|BQ|C|2322
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS
- 60S ribosomal protein L41-B
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
Coloring options: