J4_6Q95_001

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q95_001 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0919

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6Q95|1|1|C|297
6Q95|1|1|G|298
6Q95|1|1|A|299
6Q95|1|1|A|300
6Q95|1|1|G|301
*
6Q95|1|1|C|316
6Q95|1|1|G|317
6Q95|1|1|C|318
6Q95|1|1|C|319
*
6Q95|1|1|G|323
6Q95|1|1|A|324
6Q95|1|1|G|325
*
6Q95|1|1|C|337
6Q95|1|1|G|338
6Q95|1|1|U|339
6Q95|1|1|A|340
6Q95|1|1|G|341

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24