J4_6Q95_002
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6Q95|1|1|G|1271, 6Q95|1|1|A|1272, 6Q95|1|1|U|1273, 6Q95|1|1|A|1275, 6Q95|1|1|G|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q95_002 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.1428
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Q95|1|1|C|1270
6Q95|1|1|G|1271
6Q95|1|1|A|1272
6Q95|1|1|U|1273
6Q95|1|1|A|1274
6Q95|1|1|A|1275
6Q95|1|1|A|1276
*
6Q95|1|1|U|1294
6Q95|1|1|C|1295
*
6Q95|1|1|G|1645
6Q95|1|1|C|1646
6Q95|1|1|G|1647
6Q95|1|1|C|1648
*
6Q95|1|1|G|2009
6Q95|1|1|G|2010
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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