J4_6Q95_005

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6Q95|1|1|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q95_005 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.3056

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6Q95|1|1|G|1444
6Q95|1|1|A|1445
6Q95|1|1|C|1445|||A
*
6Q95|1|1|G|1466
6Q95|1|1|C|1467
*
6Q95|1|1|G|1525
6Q95|1|1|G|1526
*
6Q95|1|1|C|1546
6Q95|1|1|C|1547

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains