J4_6Q95_006

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q95_006 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0769

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6Q95|1|1|G|1772
6Q95|1|1|A|1773
6Q95|1|1|C|1774
6Q95|1|1|U|1775
6Q95|1|1|G|1776
*
6Q95|1|1|C|1788
6Q95|1|1|A|1789
6Q95|1|1|C|1790
6Q95|1|1|A|1791
6Q95|1|1|G|1792
*
6Q95|1|1|C|1827
6Q95|1|1|G|1828
6Q95|1|1|A|1829
6Q95|1|1|C|1830
*
6Q95|1|1|G|1975
6Q95|1|1|U|1976
6Q95|1|1|A|1977
6Q95|1|1|A|1978
6Q95|1|1|C|1979

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2