J4_6Q95_013
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6Q95|1|7|U|8, 6Q95|1|7|U|47, 6Q95|1|7|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q95_013 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2277
- The information below is about J4_7EQJ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6Q95|1|7|G|7
6Q95|1|7|U|8
6Q95|1|7|G|9
6Q95|1|7|G|10
*
6Q95|1|7|C|25
6Q95|1|7|G|26
6Q95|1|7|U|27
*
6Q95|1|7|A|43
6Q95|1|7|A|44
6Q95|1|7|G|45
6Q95|1|7|G|46
6Q95|1|7|U|47
6Q95|1|7|C|48
6Q95|1|7|G|49
*
6Q95|1|7|C|65
6Q95|1|7|C|66
Current chains
- Chain 7
- tRNA-fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
- Chain r
- 30S ribosomal protein S13
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