J4_6Q97_009

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACGUC*GACCAAAGA*UUGC

Length

25 nucleotides

Bulged bases

6Q97|1|2|C|183, 6Q97|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|142
6Q97|1|2|A|143
6Q97|1|2|G|144
*
6Q97|1|2|C|178
6Q97|1|2|A|179
6Q97|1|2|U|180
6Q97|1|2|A|181
6Q97|1|2|A|182
6Q97|1|2|C|183
6Q97|1|2|G|184
6Q97|1|2|U|185
6Q97|1|2|C|186
*
6Q97|1|2|G|191
6Q97|1|2|A|192
6Q97|1|2|C|193
6Q97|1|2|C|194
6Q97|1|2|A|195
6Q97|1|2|A|196
6Q97|1|2|A|197
6Q97|1|2|G|198
6Q97|1|2|A|199
*
6Q97|1|2|U|218
6Q97|1|2|U|219
6Q97|1|2|G|220
6Q97|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20