J4_6Q97_010

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGCA*UGCGAAAG*CCGUAAACGAUG*CC

Length

27 nucleotides

Bulged bases

6Q97|1|2|C|576, 6Q97|1|2|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|575
6Q97|1|2|C|576
6Q97|1|2|G|577
6Q97|1|2|C|578
6Q97|1|2|A|579
*
6Q97|1|2|U|762
6Q97|1|2|G|763
6Q97|1|2|C|764
6Q97|1|2|G|765
6Q97|1|2|A|766
6Q97|1|2|A|767
6Q97|1|2|A|768
6Q97|1|2|G|769
*
6Q97|1|2|C|810
6Q97|1|2|C|811
6Q97|1|2|G|812
6Q97|1|2|U|813
6Q97|1|2|A|814
6Q97|1|2|A|815
6Q97|1|2|A|816
6Q97|1|2|C|817
6Q97|1|2|G|818
6Q97|1|2|A|819
6Q97|1|2|U|820
6Q97|1|2|G|821
*
6Q97|1|2|C|879
6Q97|1|2|C|880

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain t

30S ribosomal protein S15

Chain v

30S ribosomal protein S17