3D structure

PDB id
6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCCC*GAGUAG*UGAAUAUG*CAAGGC
Length
24 nucleotides
Bulged bases
6Q97|1|1|U|403, 6Q97|1|1|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q97|1|1|G|266
6Q97|1|1|C|267
6Q97|1|1|C|268
6Q97|1|1|C|269
*
6Q97|1|1|G|370
6Q97|1|1|A|371
6Q97|1|1|G|372
6Q97|1|1|U|373
6Q97|1|1|A|374
6Q97|1|1|G|375
*
6Q97|1|1|U|399
6Q97|1|1|G|400
6Q97|1|1|A|401
6Q97|1|1|A|402
6Q97|1|1|U|403
6Q97|1|1|A|404
6Q97|1|1|U|405
6Q97|1|1|G|406
*
6Q97|1|1|C|421
6Q97|1|1|A|422
6Q97|1|1|A|423
6Q97|1|1|G|424
6Q97|1|1|G|425
6Q97|1|1|C|426

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain G
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:

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