J4_6Q97_016
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAG*CAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 6Q97|1|7|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q97_016 not in the Motif Atlas
- Homologous match to J4_1U0B_001
- Geometric discrepancy: 0.4885
- The information below is about J4_1U0B_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.1
- Basepair signature
- cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6Q97|1|7|G|7
6Q97|1|7|U|8
6Q97|1|7|A|9
6Q97|1|7|G|10
*
6Q97|1|7|C|26
6Q97|1|7|A|27
6Q97|1|7|C|28
*
6Q97|1|7|G|44
6Q97|1|7|G|45
6Q97|1|7|G|46
6Q97|1|7|G|47
6Q97|1|7|U|48
6Q97|1|7|C|49
6Q97|1|7|G|50
*
6Q97|1|7|U|66
6Q97|1|7|C|67
Current chains
- Chain 7
- tRNA-Val
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain r
- 30S ribosomal protein S13
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