J4_6Q98_001
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CCAG*CGAUGAGUAGGG*UCUGAAUAUG*CAAG
- Length
- 30 nucleotides
- Bulged bases
- 6Q98|1|1|A|404, 6Q98|1|1|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|268
6Q98|1|1|C|269
6Q98|1|1|A|270
6Q98|1|1|G|271
*
6Q98|1|1|C|366
6Q98|1|1|G|367
6Q98|1|1|A|368
6Q98|1|1|U|369
6Q98|1|1|G|370
6Q98|1|1|A|371
6Q98|1|1|G|372
6Q98|1|1|U|373
6Q98|1|1|A|374
6Q98|1|1|G|375
6Q98|1|1|G|376
6Q98|1|1|G|377
*
6Q98|1|1|U|397
6Q98|1|1|C|398
6Q98|1|1|U|399
6Q98|1|1|G|400
6Q98|1|1|A|401
6Q98|1|1|A|402
6Q98|1|1|U|403
6Q98|1|1|A|404
6Q98|1|1|U|405
6Q98|1|1|G|406
*
6Q98|1|1|C|421
6Q98|1|1|A|422
6Q98|1|1|A|423
6Q98|1|1|G|424
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L9
- Chain X
- 50S ribosomal protein L28
Coloring options: