J4_6Q98_002

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAAG*CGCG*CAGG*CCGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|297
6Q98|1|1|G|298
6Q98|1|1|A|299
6Q98|1|1|A|300
6Q98|1|1|G|301
*
6Q98|1|1|C|316
6Q98|1|1|G|317
6Q98|1|1|C|318
6Q98|1|1|G|319
*
6Q98|1|1|C|323
6Q98|1|1|A|324
6Q98|1|1|G|325
6Q98|1|1|G|326
*
6Q98|1|1|C|336
6Q98|1|1|C|337
6Q98|1|1|G|338
6Q98|1|1|U|339
6Q98|1|1|A|340
6Q98|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24