J4_6Q98_004

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAUAAA*UCGC*GCGCUU*AG

Length

19 nucleotides

Bulged bases

6Q98|1|1|G|1271, 6Q98|1|1|A|1272, 6Q98|1|1|U|1273, 6Q98|1|1|A|1275, 6Q98|1|1|C|1646, 6Q98|1|1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|C|1270
6Q98|1|1|G|1271
6Q98|1|1|A|1272
6Q98|1|1|U|1273
6Q98|1|1|A|1274
6Q98|1|1|A|1275
6Q98|1|1|A|1276
*
6Q98|1|1|U|1294
6Q98|1|1|C|1295
6Q98|1|1|G|1296
6Q98|1|1|C|1297
*
6Q98|1|1|G|1643
6Q98|1|1|C|1644
6Q98|1|1|G|1645
6Q98|1|1|C|1646
6Q98|1|1|U|1647
6Q98|1|1|U|1648
*
6Q98|1|1|A|2009
6Q98|1|1|G|2010

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32