J4_6Q98_006

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*UUUAAG*UGAUGACGAG*UGAAGC

Length

24 nucleotides

Bulged bases

6Q98|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|1444
6Q98|1|1|G|1445
*
6Q98|1|1|U|1466
6Q98|1|1|U|1467
6Q98|1|1|U|1468
6Q98|1|1|A|1469
6Q98|1|1|A|1470
6Q98|1|1|G|1471
*
6Q98|1|1|U|1520
6Q98|1|1|G|1521
6Q98|1|1|A|1522
6Q98|1|1|U|1523
6Q98|1|1|G|1524
6Q98|1|1|A|1525
6Q98|1|1|C|1526
6Q98|1|1|G|1527
6Q98|1|1|A|1528
6Q98|1|1|G|1529
*
6Q98|1|1|U|1542
6Q98|1|1|G|1543
6Q98|1|1|A|1544
6Q98|1|1|A|1545
6Q98|1|1|G|1546
6Q98|1|1|C|1547

Current chains

Chain 1

23S ribosomal RNA

Nearby chains