J4_6Q98_010

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAG*CAUAACGU*ACCAAAG*UGCC

Length

23 nucleotides

Bulged bases

6Q98|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|G|141
6Q98|1|2|G|142
6Q98|1|2|A|143
6Q98|1|2|G|144
*
6Q98|1|2|C|178
6Q98|1|2|A|179
6Q98|1|2|U|180
6Q98|1|2|A|181
6Q98|1|2|A|182
6Q98|1|2|C|183
6Q98|1|2|G|184
6Q98|1|2|U|185
*
6Q98|1|2|A|192
6Q98|1|2|C|193
6Q98|1|2|C|194
6Q98|1|2|A|195
6Q98|1|2|A|196
6Q98|1|2|A|197
6Q98|1|2|G|198
*
6Q98|1|2|U|219
6Q98|1|2|G|220
6Q98|1|2|C|221
6Q98|1|2|C|222

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20