J4_6Q98_012

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUGGAGC*GCUACAAUGG*CGUAGUCC*GUCGGAAUC

Length

35 nucleotides

Bulged bases

6Q98|1|2|U|1240, 6Q98|1|2|G|1297, 6Q98|1|2|C|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|G|941
6Q98|1|2|G|942
6Q98|1|2|U|943
6Q98|1|2|G|944
6Q98|1|2|G|945
6Q98|1|2|A|946
6Q98|1|2|G|947
6Q98|1|2|C|948
*
6Q98|1|2|G|1233
6Q98|1|2|C|1234
6Q98|1|2|U|1235
6Q98|1|2|A|1236
6Q98|1|2|C|1237
6Q98|1|2|A|1238
6Q98|1|2|A|1239
6Q98|1|2|U|1240
6Q98|1|2|G|1241
6Q98|1|2|G|1242
*
6Q98|1|2|C|1296
6Q98|1|2|G|1297
6Q98|1|2|U|1298
6Q98|1|2|A|1299
6Q98|1|2|G|1300
6Q98|1|2|U|1301
6Q98|1|2|C|1302
6Q98|1|2|C|1303
*
6Q98|1|2|G|1334
6Q98|1|2|U|1335
6Q98|1|2|C|1336
6Q98|1|2|G|1337
6Q98|1|2|G|1338
6Q98|1|2|A|1339
6Q98|1|2|A|1340
6Q98|1|2|U|1341
6Q98|1|2|C|1342

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13