J4_6Q9A_001

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6Q9A|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q9A_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1178

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|C|268
6Q9A|1|1|C|269
*
6Q9A|1|1|G|370
6Q9A|1|1|A|371
6Q9A|1|1|G|372
6Q9A|1|1|U|373
6Q9A|1|1|A|374
6Q9A|1|1|G|375
*
6Q9A|1|1|U|399
6Q9A|1|1|G|400
6Q9A|1|1|A|401
6Q9A|1|1|A|402
6Q9A|1|1|U|403
6Q9A|1|1|A|404
6Q9A|1|1|U|405
6Q9A|1|1|G|406
*
6Q9A|1|1|C|421
6Q9A|1|1|A|422
6Q9A|1|1|A|423
6Q9A|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28