J4_6Q9A_006

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6Q9A|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q9A_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1007

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6Q9A|1|1|U|1313
6Q9A|1|1|C|1314
*
6Q9A|1|1|G|1338
6Q9A|1|1|G|1339
6Q9A|1|1|U|1340
6Q9A|1|1|G|1341
6Q9A|1|1|A|1342
6Q9A|1|1|G|1343
*
6Q9A|1|1|C|1404
6Q9A|1|1|U|1405
*
6Q9A|1|1|A|1597
6Q9A|1|1|A|1598
6Q9A|1|1|U|1599
6Q9A|1|1|C|1600
6Q9A|1|1|G|1601
6Q9A|1|1|U|1602
6Q9A|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23