J4_6QDW_002

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QDW_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0741

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6QDW|1|b|G|297
6QDW|1|b|G|298
6QDW|1|b|A|299
6QDW|1|b|A|300
6QDW|1|b|G|301
*
6QDW|1|b|C|316
6QDW|1|b|G|317
6QDW|1|b|C|318
6QDW|1|b|G|319
*
6QDW|1|b|C|323
6QDW|1|b|A|324
6QDW|1|b|G|325
*
6QDW|1|b|C|337
6QDW|1|b|G|338
6QDW|1|b|U|339
6QDW|1|b|A|340
6QDW|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24