J4_6QDW_003
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 6QDW|1|b|U|655, 6QDW|1|b|A|656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QDW_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.5727
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6QDW|1|b|C|603
6QDW|1|b|A|604
6QDW|1|b|A|605
6QDW|1|b|G|606
*
6QDW|1|b|C|626
6QDW|1|b|G|627
6QDW|1|b|A|628
6QDW|1|b|A|629
6QDW|1|b|G|630
*
6QDW|1|b|C|637
6QDW|1|b|G|638
6QDW|1|b|A|639
6QDW|1|b|G|640
*
6QDW|1|b|C|652
6QDW|1|b|G|653
6QDW|1|b|U|654
6QDW|1|b|U|655
6QDW|1|b|A|656
6QDW|1|b|A|657
6QDW|1|b|G|658
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
Coloring options: