J4_6QDW_005

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6QDW|1|b|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QDW_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0764

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|G|1312
6QDW|1|b|G|1313
6QDW|1|b|U|1314
6QDW|1|b|U|1315
6QDW|1|b|C|1316
*
6QDW|1|b|G|1340
6QDW|1|b|G|1341
6QDW|1|b|U|1342
6QDW|1|b|G|1343
6QDW|1|b|A|1344
6QDW|1|b|G|1345
*
6QDW|1|b|C|1406
6QDW|1|b|U|1407
*
6QDW|1|b|A|1599
6QDW|1|b|A|1600
6QDW|1|b|U|1601
6QDW|1|b|C|1602
6QDW|1|b|G|1603
6QDW|1|b|U|1604
6QDW|1|b|A|1605
6QDW|1|b|C|1606

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23