J4_6QDW_009
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6QDW|1|b|U|1975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QDW_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1022
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6QDW|1|b|C|1835
6QDW|1|b|U|1836
6QDW|1|b|G|1837
*
6QDW|1|b|C|1909
6QDW|1|b|G|1910
*
6QDW|1|b|C|1928
6QDW|1|b|C|1929
6QDW|1|b|U|1930
6QDW|1|b|A|1931
6QDW|1|b|A|1932
6QDW|1|b|G|1933
6QDW|1|b|G|1934
6QDW|1|b|U|1935
6QDW|1|b|A|1936
6QDW|1|b|G|1937
*
6QDW|1|b|C|1971
6QDW|1|b|G|1972
6QDW|1|b|A|1973
6QDW|1|b|A|1974
6QDW|1|b|U|1975
6QDW|1|b|G|1976
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
- Chain v
- Transfer RNA; tRNA
Coloring options: