3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
6QDW|1|b|U|1975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6QDW_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1022
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6QDW|1|b|C|1835
6QDW|1|b|U|1836
6QDW|1|b|G|1837
*
6QDW|1|b|C|1909
6QDW|1|b|G|1910
*
6QDW|1|b|C|1928
6QDW|1|b|C|1929
6QDW|1|b|U|1930
6QDW|1|b|A|1931
6QDW|1|b|A|1932
6QDW|1|b|G|1933
6QDW|1|b|G|1934
6QDW|1|b|U|1935
6QDW|1|b|A|1936
6QDW|1|b|G|1937
*
6QDW|1|b|C|1971
6QDW|1|b|G|1972
6QDW|1|b|A|1973
6QDW|1|b|A|1974
6QDW|1|b|U|1975
6QDW|1|b|G|1976

Current chains

Chain b
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2
Chain v
Transfer RNA; tRNA

Coloring options:


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