J4_6QNQ_002

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6QNQ|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNQ_002 not in the Motif Atlas

Homologous match to J4_6CZR_012

Geometric discrepancy: 0.1731

The information below is about J4_6CZR_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_36568.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6QNQ|1|13|G|142
6QNQ|1|13|A|143
6QNQ|1|13|G|144
*
6QNQ|1|13|C|178
6QNQ|1|13|A|179
6QNQ|1|13|U|180
6QNQ|1|13|G|181
6QNQ|1|13|U|182
6QNQ|1|13|G|183
*
6QNQ|1|13|C|194
6QNQ|1|13|A|195
6QNQ|1|13|A|196
6QNQ|1|13|A|197
6QNQ|1|13|G|198
*
6QNQ|1|13|C|219
6QNQ|1|13|G|220
6QNQ|1|13|C|221

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20