3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
6QNQ|1|1G|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6QNQ_014 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0926
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6QNQ|1|1G|G|115
6QNQ|1|1G|A|116
6QNQ|1|1G|G|117
6QNQ|1|1G|U|118
6QNQ|1|1G|A|119
6QNQ|1|1G|A|120
6QNQ|1|1G|C|121
6QNQ|1|1G|G|122
*
6QNQ|1|1G|U|239
6QNQ|1|1G|C|240
*
6QNQ|1|1G|G|286
6QNQ|1|1G|U|287
6QNQ|1|1G|A|288
6QNQ|1|1G|G|289
*
6QNQ|1|1G|C|311
6QNQ|1|1G|C|312

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 3A
30S ribosomal protein S12
Chain 7A
30S ribosomal protein S16
Chain 8A
30S ribosomal protein S17

Coloring options:


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