J4_6QNQ_018

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6QNQ|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNQ_018 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1077

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6QNQ|1|1H|C|268
6QNQ|1|1H|U|269
*
6QNQ|1|1H|G|370
6QNQ|1|1H|A|371
6QNQ|1|1H|G|372
6QNQ|1|1H|U|373
6QNQ|1|1H|A|374
6QNQ|1|1H|C|375
*
6QNQ|1|1H|G|399
6QNQ|1|1H|G|400
6QNQ|1|1H|A|401
6QNQ|1|1H|A|402
6QNQ|1|1H|U|403
6QNQ|1|1H|C|404
6QNQ|1|1H|U|405
6QNQ|1|1H|G|406
*
6QNQ|1|1H|U|421
6QNQ|1|1H|A|422
6QNQ|1|1H|A|423
6QNQ|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28