J4_6QNR_007

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6QNR|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_007 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0818

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6QNR|1|14|G|1310
6QNR|1|14|G|1311
6QNR|1|14|U|1312
6QNR|1|14|U|1313
6QNR|1|14|C|1314
*
6QNR|1|14|G|1338
6QNR|1|14|G|1339
6QNR|1|14|U|1340
6QNR|1|14|U|1341
6QNR|1|14|A|1342
6QNR|1|14|G|1343
*
6QNR|1|14|C|1404
6QNR|1|14|U|1405
*
6QNR|1|14|A|1597
6QNR|1|14|C|1598
6QNR|1|14|C|1599
6QNR|1|14|C|1600
6QNR|1|14|G|1601
6QNR|1|14|U|1602
6QNR|1|14|A|1603
6QNR|1|14|C|1604

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34